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There is a way; I'm not aware of any in-built way of doing it, but with a very simple custom Indicator, it is possible to plot what you are looking for, assuming you have access to the indexes you are referring to in your datafeed in NinjaTrader.
See the attached code as an example, it's very simplistic and, for now, plotting a diff on a minute basis. You provide the instrument to diff against as a parameter to the indicator.
